BIO 440: Population Genetics and Evolution
Fall 2014


Dr. Wade B. Worthen
Lecture: 10:00-11:15, Plyler 143
Laboratory: Weds: 2:30-5:20, Plyler 024
Texts: Evolutionary Analysis, Freeman and Herron, 5th Ed.


LECTURE SYLLABUS

DATE TOPIC ppt READINGS* LAB (Weds)
Aug 26 (T)
Aug 28 (H)
Evolution and the History of Evolutionary Thought
Darwin
ppt
ppt
wiki UCMP
Chapt. 3

Selection Experiment Overview

Sept 2 (T)
Sept 4 (H)

Evolution since Darwin
CONVOCATION
ppt
.
Chapt. 3
.

Selection: Apparatus Test
Sept 9 (T)
Sept 11 (H)
Patterns in Evolution I
Patterns in Evolution II
ppt
ppt
Chapt. 2, 4
Chapt. 5
Variation Review: ppt Questions
Selection I

Sept 16 (T)
Sept 18 (H)

Hardy - Weinberg Models
Modeling Selection
ppt
ppt

Chapt. 6
QUIZ #1
Gel Electrophoresis
Sept 23 (T)
Sept 25 (H)
Deviations from HWE: Mutation, Migration, and Non-random Mating
Drift
ppt
ppt
Chapt. 6
Chapt. 7

Selection II
Sept 30 (T)
Oct 2 (H)
****** EXAM #1 ******
The Neutral and Nearly Nearly Neutral Models
.
ppt
.
Chapt. 7

Pop Gen Simulations I
Oct 7 (T)
Oct 9 (H)
Multiple Loci
Quantitative Traits
ppt
ppt
Chapt. 8
Chapt. 9
Selection III
Oct 14 (T)
Oct 16 (H)
FALL BREAK
Selection and Adaptation
.
ppt
.
Chapt. 10

No Lab
Oct 21 (T)
Oct 23 (H)
Levels of Selection and Kin Selection
Sexual Selection
ppt
ppt
Chapt. 11
Chapt. 11
QUIZ #2
Selection IV
Oct 28 (T)
Oct 30 (H)
Cooperation
Life History
ppt
ppt
Chapt. 12
Chapt. 13

Phylogeny
Nov 4 (T)
Nov 6 (H)
Aging
Evo-Devo
ppt
ppt
Chapt. 19
Chapt. 19
****EXAM #2**** in LAB
Selection VI

Nov 11 (T)
Nov 13 (H)

Species
Speciation I
ppt
ppt
Chapt. 16
Chapt. 16

Ecomorphology
Nov 18 (T)
Nov 20 (H)
Speciation II
The Paleozoic
ppt
ppt
Chapt. 17
Chapt. 18
Reproductive Isolation
Nov 25 (T)
Nov 27 (H)
Paleozoic II
THANKSGIVING
ppt
.
Chapt. 18
.
No Lab
Dec 2 (T)
Dec 4 (H)
The Mesozoic
The Cenozoic
ppt
ppt
Chapt. 18
Chapt. 20

PRESENTATIONS
Dec 9 (T)
.
Human Evolution and Mass Extinction
.
ppt
.
Chapt. 14
.
DEC 16 (T) FINAL EXAM - 8:30-11:00am

*Plus additional readings from the primary literature.

Attendance Policy:
I expect you to attend all lectures and laboratories. Notification that you will need to miss a lab needs to be given to me a week in advance. If you have a disability and you need academic accomodations, you should contact Gina Parris at the Office of Disability Services in Adm 207(x-2322). Do this in a timely manner, early in the term. Then, you should bring this request to me.

Grading Policy:
I will assign grades in accordance with the following criteria: There are 700 available points, and letter grades will be assigned such that grades of 90% or above earn an "A range" grade, 80%-89% a "B range" grade, and so forth. +/- grades will be assigned based on total percentage of points earned, as well as more subjective criteria such as performance through the term and performance on the final. Any "curving", if warranted, will be done on total point distributions and not individual assignments.

Assignments:
1. There will be 2 hourly exams, given in class, covering the material in that unit.
2. There are two quizzes, one before the first exam and one between the first and second exams, covering material since the last exam.
3. The final exam is comprehensive; 100 pts on the last unit, and 100 pts on material predating the second exam.
4. You will each write a short experimental lab report (5-6 pages) on the selection experiment. This will be done in the same structure as an R&A paper, with at least 10 references from the primary literature.
5. The other laboratories will have "lab assignments", which will be question sets for you to answer.
6. You will also each write a short (5-6 pg) paper on a topic of your choosing, and give a short 12-15 ppt presentation on your topic at the end of the term.

 

ASSIGNMENT PTS.
Lecture Exams (2 @ 100) 200
Quizzes (2 @ 50) 100
Final Exam (comprehensive) 200
Lab Report on Selection Experiment 50
Topical Paper and Presentation 50
Laboratory Assignments (5 @ 20) 100
TOTAL 700